Proximity Labeling: Methods and Protocols

1.          Eric Kool, "Efficient Nucleic Acid Detection by Templated Reaction Cascades" Department of Chemistry, Stanford University

2.          Kurt W. Gothelf, "Template-directed covalent conjugation of DNA to native antibodies, transferrin and othermetal-binding proteins" Department of Chemistry, Aarhus University

3.          Zhuo Tang, "Template-directed Chemical Ligation to Obtain 3'-3' and 5'-5' Phosphodiester DNA Linkages", The College of Life Science, Sichuan University

4.          Yossi Weizmann, "Synthesizing topological structures containing RNA" Department of Chemistry, The University of Chicago

5.          Richard Wombacher, "DNA-templated Chemistry", Institute of Pharmacy and Molecular Biotechnology, Heidelberg University

Part 2: Proximity driven covalent labeling of proteins and nucleic acids

7.          Itaru Hamachi, "Non-enzymatic Covalent Protein Labeling Using a Reactive Tag", Department of Synthetic Chemistry and Biological Chemistry, Kyoto University

8.          Virginia Cornish, "An In Vivo Covalent TMP-tag Based on Proximity-Induced Reactivity", Department of Chemistry, Columbia University

10.      Zachary T Ball, "Site-Specific Protein Modification with a Dirhodium Metallopeptide Catalyst" Department of Chemistry, Rice University

11.      Yao-Wen Wu, "A Rapid and Fluorogenic TMP-AcBOPDIPY Probe for Covalent Labeling of Proteins in Live Cells" Chemical Genomics Centre of the Max Planck Society, Dortmund

13.      Carolyn R. Bertozzi, "Live-Cell Labeling of Specific Protein Glycoforms by Proximity-Enhanced Bioorthogonal Ligation"

14.      Andrew Tsorkas, "Proximity-Based Sortase-Mediated Ligation", Department of Bioengineering, University of Pennsylvania

15.      Andres Jäschke, "Proximity induced covalent labeling of RNAs with fluorophore binding aptamers", Institute of Pharmacy and Molecular Biotechnology, Heidelberg University

Part 3: Proximity labeling to reveal interactions between biomolecules

16.      Alice Ting, "Proximity biotinylation (via APEX2) as a method for mapping proteins associated with mitochondrial DNA in living cells", Department of Chemistry, Massachusetts Institute of Technology

17.      Dr. Kyle J Roux, "An improved smaller biotin ligase for BioID proximity labeling", Department of Pediatrics, Sanford School of Medicine, University of South Dakota

18.      Roberto Bonasio, "In Vivo Proximity Labeling for the Detection of Protein-Protein and Protein-RNA Interactions" Perelman School of Medicine, University of Pennsylvania

19.      Koichi Honke, "Biochemical visualization of cell surface molecular clustering in living cells" Department of Biochemistry, Kochi University

20.      Alexander Mazo, "Detection of RNA-DNA association by a proximity ligation-based method"

22.      Ulf Landegren, "In vitro analysis of DNA-protein interactions by proximity ligation", Department of Genetics and Pathology, Uppsala University

23.      Chuan He, "Utilization of proximity affect to manipulate the epigenetics of mRNAs", Department of Chemistry, University of Chicago

24.      Jay Schendure, "High-throughput determination of RNA structure by proximity ligation", Department of Genome Sciences, University of Washington