Plant Metabolomics: Methods and Protocols

1. Practical Applications of Metabolomics in Plant Biology

Robert D. Hall and Nigel Hardy

Material Preparation

1. Aspects of Experimental Design for Plant Metabolomics Experiments and Guidelines for Growth of Plant Material

Yves Gibon and Dominique Rolin

1. Separating the Inseparable: The Metabolomic Analysis of Plant - Pathogen Interactions

J. William Allwood , Jim Heald , Amanda J. Lloyd , Royston Goodacre and Luis A. J. Mur

1. Precautions for Harvest, Sampling, Storage and Transport of Crop Plant Metabolomics Samples

Benoît Biais, Stéphane Bernillon, Catherine Deborde, Cécile Cabasson, Dominique Rolin, Yaakov Tadmor, Joseph Burger, Arthur A. Schaffer, Annick Moing

1. Tissue Preparation using Arabidopsis

Aimee M. Galster, Jennie Lewis, Sonia J. Miller, Delia-Irina Corol, Michael H. Beale and Jane L. Ward

Chemical Analysis Approaches

1. Solid Phase Micro-Extraction (SPME) GC - MS Analysis of Natural Volatile Components in Melon and Rice

Harrie A. Verhoeven, Harry Jonker, Ric C.H. de Vosand Robert D Hall

1. Profiling Primary Metabolites of Tomato Fruit with Gas Chromatography/Mass-Spectrometry

Sonia Osorio, Phuc Thi Do and Alisdair R. Fernie

1. High Performance Liquid Chromatography (HPLC)- Mass Spectrometry (MS) Analysis of Plant Metabolites in Brassicaceae

Ric C.H. De Vos, Bert Schipper and Robert D. Hall

1. UPLC-MS-based Metabolite Analysis in Tomato

Ilana Rogachev and Asaph Aharoni

1. High Precision Measurement and Fragmentation Analysis for Metabolite Identification

Madalina Oppermann, Nicolaie Eugen Damoc, Catharina Crone, Thomas Moehring, Helmut Muenster, Martin Hornshaw

1. Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) for Plant Metabolite Profiling and Metabolite Identification

J. William Allwood, David Parker, Manfred Beckmann , John Draper , Royston Goodacre

1. Combined NMR and Flow Injection ESI-MS for Brassicaceae Metabolomics

National Centre for Plant and Combined NMR and Flow Injection ESI-MS for Brassicaceae Metabolomics

John M. Baker, Jane L. Ward and Michael H. Beale

1. ICP-MS and LC-ICP-MS for Analysis of Trace Element Content and Speciation in the Cereal Grain

Persson, D.P., Hansen, T.H., Laursen, K.H., Husted, S. and Schjoerring, J.K.

1. The Use of Genomics and Metabolomics Methods to Quantify Fungal Endosymbionts and Alkaloids in Grasses

Susanne Rasmussen, Geoffrey A. Lane, Wade Mace, Anthony J. Parsons and Hong Xue

Data Analysis

1. Data (pre-)processing of Nominal and Accurate Mass LC-MS or GC-MS Data using MetAlign

A. Lommen

1. TagFinder-Preprocessing Software for the Fingerprinting and the Profiling of Gas Chromatography-Mass Spectrometry

(GC-MS) Based Metabolome Analyses

Alexander Luedemann, Luise von Malotky, Alexander Erban, Joachim Kopka

1. Chemical Identification Strategies using Liquid Chromatography-photo Diode Array-solid Phase Extraction-nuclear Magnetic Resonance / Mass Spectrometry

Sofia Moco and Jacques Vervoort

1. A Strategy for Selecting Data Mining Techniques in Metabolomics

Ahmed Hmaidan BaniMustafa, Nigel William Hardy