Computational Modeling of Signaling Networks

1. Predictive Models for Cellular Signaling Networks

Dagmar Iber and Georgios Fengos

2. Analysing and Contraining Signaling Networks: Parameter Estimation

Florian Geir, Georgios Fengos, Federico Felizzi, Dagmar Iber

3. A Tutorial on Mathematical Modeling of Biological Signaling Pathways

Zhike Zi

4. Bistability in one Equation or Fewer

Graham A. Anderson Xuedong Liu James E. Ferrell, Jr.

5. Mathematical Investigation of How Oncogenic Ras Mutants Promote Ras Signaling

Edward C. Stites and Kodi S. Ravichandran

6. Modelling miRNA Regulation in Cancer Signalling Systems. miR-34a Regulation of the p53/Sirt1 Signalling Module

Xin Lai, Olaf Wolkenhauer, and Julio Vera

7. Design of Experiments to Investigate Dynamic Cell Signaling Models

Samuel Bandara and Tobias Meyer

8. Mathematical Modeling of Biochemical Systems with PottersWheel

Thomas Maiwald, Oliver Eberhardt, Julie Blumberg

9. Rule-Based Modeling of Signal Transduction: APrimer

John A.P. Sekar and James R. Faeder

10. Computational Modeling of Signal Transduction Networks: A Pedagogical Exposition

Ashok Prasad

11. Modeling Spatiotemporal Dynamics of Bacterial Populations

Hao Song and Lingchong You

12. Discrete Dynamic Modeling of Signal Transduction Networks

Assieh Saddatpour and Réka Albert

13. Analytic Methods for Modeling Stochastic Regulatory Networks

Aleksandra M. Walczak,Andrew Mugler, and Chris H. Wiggins