Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approach

Ch. 1: Expression analysis and genome annotations with RNA sequencing

Masaaki Kobayashi, Hajime Ohyanagi, Kentaro Yano

Ch. 2: The application of Next Generation Sequencing techniques to Plant

Epigenomics

Manu J. Dubin

Ch. 3: Whole genome sequencing to identify genes and QTL in rice

Ryohei Terauchi, Akira Abe, Hiroki Takagi, Muluneh Tamiru, Rym Fekih, Satoshi Natsume, Hiroki Yaegashi, Shunichi Kosugi, Hiroyuki Kanzaki, Hideo Matsumura, Hiromasa Saitoh, Kentaro Yoshida, Liliana Cano, Sophien Kamoun

Ch. 4: Variant calling using NGS data in European aspen (Populus tremula)

Jing Wang, Douglas Scofield, Nathaniel R. Street, Pär K. Ingvarsson

Ch. 5: Leafy Spurge Genomics: A Model Perennial Weed To

Investigate Development, Stress Responses, And Invasiveness

David Horvath, James Anderson, Wun Chao, Michael Foley, Münevver Dogramaci

Ch. 6: Utilization of NGS and proteomic-based approaches to gain insights on

cellular responses to singlet oxygen and improve energy yields for bacterial stress adaptation

Roger Greenwell, Mobashar Hussain Urf Turabe Fazil, H P Pandey.

Ch. 7: Experimental evolution and next generation sequencing illuminate the

evolutionary trajectories of microbes

Mario Fares

Ch. 8: Plant carbohydrate active enzyme (CAZyme) repertoires: a comparative

Study

Huansheng Cao, Alex Ekstrom, Yanbin Yin

Ch. 9: Metagenomics of Plant- Microbe Interactions

Riccardo Rosselli, Andrea Squartini

Ch. 10: Genes and trans-factors underlying embryogenic transition in plant

soma-cells

Dhananjay K. Pandey, Bhupendra Chaudhary

Ch. 11: Bioinformatics tools to analyze the proteome and genome data

Ritesh Kumar, Shalini Singh, Vikash Kumar Dubey

Ch. 12: High through-put transcriptome analysis of plant stress responses

Hüseyin Tombuloglu, Güzin Tombuloglu

Ch. 13: CNV and structural variation in plants: prospects of NGS

Approaches

Enrico Francia, Nicola Pecchioni, Alberto Policriti, Simone Scalabrin