Video Bioinformatics: From Live Imaging to Knowledge

Part I: Video Bioinformatics: An Introduction

Live Imaging and Video Bioinformatics
Bir Bhanu and Prue Talbot

Video Bioinformatics Methods for Analyzing Cell Dynamics: A Survey
Nirmalya Ghosh

Part II: Organismal Dynamics: Analyzing Brain Injury and Disease

High and Low Level Contextual Modeling for the Detection of Mild-Traumatic Brain Injury
Anthony Bianchi, Bir Bhanu and Andre Obenaus

Automated Identification of Injury Dynamics after Neonatal Hypoxia-Ischemia
Nirmalya Ghosh, Stephen Ashwal and Andre Obenaus

A Real-Time Analysis of Traumatic Brain Injury from T2 Weighted Magnetic Resonance Images using a Symmetry-Based Algorithm
Ehsan T. Esfahani, Devin W. McBride, Somayeh B. Shafiei and Andre Obenaus

Visualizing Cortical Tissue Optical Changes during Seizure Activity with Optical Coherence Tomography
Melissa M. Eberle, Carissa L. Rodriguez, Jenny I. Szu, Yan Wang, Mike S. Hsu, Devin K. Binder and B. Hyle Park

Part III: Dynamics of Stem Cells

Bio-Inspired Segmentation and Detection Methods for Human Embryonic Stem Cells
Benjamin X. Guan, Bir Bhanu, Prue Talbot and Jo-Hao Weng

A Video Bioinformatics Method to Quantify Cell Spreading and Its Application to Cells Treated with Rho-associated Protein Kinase and Blebbistatin
Jo-Hao Weng, Rattapol Phandthong and Prue Talbot

Evaluation of Dynamic Cell Processes an

d Behavior Using Video Bioinformatics Tools
Sabrina C. Lin, Henry Yip, Rattapol Phandthong, Barbara Davis and Prue Talbot

Part IV: Dynamic Processes in Plant and Fungal Systems

Video Bioinformatics: A New Dimension in Quantifying Plant Cell Dynamics
Nolan Ung and Natasha V Raikhel

Understanding Growth of Pollen Tube in Video
Asongu L. Tambo, Bir Bhanu, Nan Luo and Zhenbiao Yang

Automatic Image Analysis Pipeline for Studying Growth in Katya Mkrtchyan, Anirban Chakraborty, Min Liu and Amit Roy-Chowdhury

Quantitative Analyses using Video Bioinformatics and Image Analysis Tools During Growth and Development in the Multicellular Fungus Neurospora Crassa
Ilva E. Cabrera, Asongu L. Tambo, Alberto C. Cruz, Benjamin X. Guan, Bir Bhanu and Katherine A. Borkovich

Part V: Dynamics of Intracellular Molecules

Quantification of the Dynamics of DNA Repair to Ionizing Radiation via Colocalization of 53BP1 and H2AX
Torsten Groesser, Gerald Fontenay, Ju Han, Hang Chang and Bahram Parvin

A Method to Regulate Cofilin Transport Using Optogenetics and Live Video Analysis
Atena Zahedi, Vincent On and Irnya Ethell

Part VI: Software, Systems and Databases

Integrated 5-D Cell Tracking and Linked Analytics in the FARSIGHT Open Source Toolkit
Amine Merouane, Arunchalam Narayanaswamy and Badrinath Roysam

Video Bioinfo
rmatics Databases and Software
Ninad S. Thakoor, Alberto C. Cruz and Bir Bhanu

Understanding of the Biological Process of Non-Verbal Communication: Facial Emotion and Expression Recognition
Alberto C. Cruz, Bir Bhanu and Ninad S. Thakoor

Identification and Retrieval of Moth Images Based on Wing Patterns
Linan Feng, Bir Bhanu and John Heraty